Functions

Functions in agrocolae package to perform Analysis

AMMI()

AMMI Analysis

AMMI.contour()

AMMI contour

audpc()

Calculating the absolute or relative value of the AUDPC

audps()

The Area Under the Disease Progress Stairs

bar.err()

Plotting the standard error or standard deviance of a multiple comparison of means

bar.group()

Plotting the multiple comparison of means

BIB.test()

Finding the Variance Analysis of the Balanced Incomplete Block Design

carolina()

North Carolina Designs I, II and III

Chz2006

Data amendment Carhuaz 2006

CIC

Data for late blight of potatoes

clay

Data of Ralstonia population in clay soil

ComasOxapampa

Data AUDPC Comas - Oxapampa

consensus()

consensus of clusters

corn

Data of corn

correl()

Correlation Coefficient

correlation()

Correlation analysis. Methods of Pearson, Spearman, Kendall and Lin

cotton

Data of cotton

cv.model()

Coefficient of the experiment variation

cv.similarity()

Coefficient of the similarity matrix variation

DAU.test()

Finding the Variance Analysis of the Augmented block Design

CIC

Data for the analysis of carolina genetic design

delete.na()

Omitting the rows or columns with missing observations of a matrix (NA)

design.ab()

Design of experiments for a factorial

design.alpha()

Alpha design type (0,1)

design.bib()

Randomized Balanced Incomplete Block Designs. BIB

design.crd()

Completely Randomized Design

design.cyclic()

Cyclic designs

design.dau()

Augmented block design

design.graeco()

Graeco - latin square design

design.lattice()

Lattice designs

design.lsd()

Latin Square Design

design.rcbd()

Randomized Complete Block Design

design.split()

Split Plot Design

design.strip()

Strip Plot Design

design.youden()

Incomplete Latin Square Design

diffograph()

Plotting the multiple comparison of means

disease

Data evaluation of the disease overtime

duncan.test()

Duncan's new multiple range test

durbin.test()

Durbin test and multiple comparison of treatments

friedman()

Friedman test and multiple comparison of treatments

frijol

Data of frijol

genxenv

Data of potato yield in a different environment

Glycoalkaloids

Data Glycoalkaloids

graph.freq()

Histogram

grass

Data for Friedman test

greenhouse

Data in greenhouse

growth

Data growth of trees

haynes

Data of AUDPC for nonparametrical stability analysis

Hco2006

Data amendment Huanuco 2006

hcut()

Cut tree of consensus

heterosis

Data of potato, Heterosis

hgroups()

groups of hclust

HSD.test()

Multiple comparisons: Tukey

huasahuasi

Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peru

index.AMMI()

AMMI index and yield stability

index.bio()

Biodiversity Index

index.smith()

Uniformity soil. Smith's Index of Soil Heterogeneity

intervals.freq()

Class intervals

join.freq()

Join class for histogram

kendall()

Correlation of Kendall

kruskal()

Kruskal Wallis test and multiple comparison of treatments.

kurtosis()

Finding the Kurtosis coefficient

lastC()

Setting the last character of a chain

lateblight()

LATEBLIGHT - Simulator for potato late blight Version LB2004

lineXtester()

Line x Tester Analysis

LSD.test()

Multiple comparisons, "Least significant difference" and Adjust P-values

LxT

Data Line by tester

markers

Data of molecular markers

Median.test()

Median test. Multiple comparisons

melon

Data of yield of melon in a Latin square experiment

montecarlo()

Random generation by Montecarlo

natives

Data of native potato

nonadditivity()

Nonadditivity model test

normal.freq()

Normal curve on the histogram

ogive.freq()

Plotting the ogive from a histogram

order.group()

Ordering the treatments according to the multiple comparison

orderPvalue()

Grouping the treatments averages in a comparison with a minimum value

pamCIP

Data Potato Wild

paracsho

Data of Paracsho biodiversity

path.analysis()

Path Analysis

PBIB.test()

Analysis of the Partially Balanced Incomplete Block Design

plots

Data for an analysis in split-plot

plrv

Data clones from the PLRV population

polygon.freq()

The polygon of frequency on the histogram

potato

Data of cutting

ralstonia

Data of assessment of the population in the soil R.solanacearum

reg.homog()

Homologation of regressions

REGW.test()

Ryan, Einot and Gabriel and Welsch multiple range test

resampling.cv()

Resampling to find the optimal number of markers

resampling.model()

Resampling for linear models

rice

Data of Grain yield of rice variety IR8

RioChillon

Data and analysis Mother and baby trials

scheffe.test()

Multiple comparisons, scheffe

similarity()

Matrix of similarity in binary data

simulation.model()

Simulation of the linear model under normality

sinRepAmmi

Data for AMMI without repetition

skewness()

Finding the skewness coefficient

SNK.test()

Student-Newman-Keuls (SNK)

soil

Data of soil analysis for 13 localities

sp.plot()

Splip-Plot analysis

ssp.plot()

Split-split-Plot analysis

stability.nonpar()

Nonparametric stability analysis

stability.par()

Stability analysis. SHUKLA'S STABILITY VARIANCE AND KANG'S

stat.freq()

Descriptive measures of grouped data

strip.plot()

Strip-Plot analysis

sturges.freq()

Class intervals for a histogram, the rule of Sturges

sweetpotato

Data of sweetpotato yield

table.freq()

frequency Table of a Histogram

tapply.stat()

Statistics of data grouped by factors

vark()

Variance K, ties, Kendall

waerden.test()

Multiple comparisons. The van der Waerden (Normal Scores)

waller()

Computations of Bayesian t-values for multiple comparisons

waller.test()

Multiple comparisons, Waller-Duncan

weatherSeverity()

Weather and Severity

wilt

Data of Bacterial Wilt (AUDPC) and soil

yacon

Data Yacon

zigzag()

order plot in serpentine

Datasets

Data for Reproducible Examples

CIC

Data for late blight of potatoes

Chz2006

Data amendment Carhuaz 2006

ComasOxapampa

Data AUDPC Comas - Oxapampa

CIC

Data for the analysis of carolina genetic design

Glycoalkaloids

Data Glycoalkaloids

Hco2006

Data amendment Huanuco 2006

LxT

Data Line by tester

RioChillon

Data and analysis Mother and baby trials

clay

Data of Ralstonia population in clay soil

corn

Data of corn

cotton

Data of cotton

disease

Data evaluation of the disease overtime

frijol

Data of frijol

genxenv

Data of potato yield in a different environment

grass

Data for Friedman test

greenhouse

Data in greenhouse

growth

Data growth of trees

haynes

Data of AUDPC for nonparametrical stability analysis

heterosis

Data of potato, Heterosis

huasahuasi

Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peru

markers

Data of molecular markers

melon

Data of yield of melon in a Latin square experiment

natives

Data of native potato

pamCIP

Data Potato Wild

paracsho

Data of Paracsho biodiversity

plots

Data for an analysis in split-plot

plrv

Data clones from the PLRV population

potato

Data of cutting

ralstonia

Data of assessment of the population in the soil R.solanacearum

rice

Data of Grain yield of rice variety IR8

sinRepAmmi

Data for AMMI without repetition

soil

Data of soil analysis for 13 localities

sweetpotato

Data of sweetpotato yield

wilt

Data of Bacterial Wilt (AUDPC) and soil

yacon

Data Yacon