Cut tree of consensus

Source: R/hcut.R

It shows dendrogram of a consensus of a tree generated by hclust.

hcut(consensus, h, group, col.text = "blue", cex.text = 1, ...)

Arguments

consensus

object consensus
h

numeric scalar or vector with heights where the tree should be cut.
group

an integer scalar with the desired number of group
col.text

color of number consensus
cex.text

size of number consensus
...

Other parameters of the function plot() in cut()

Value

hcut Returns a data frame with group memberships and consensus tree.

See also

hclust, consensus, hgroups

Examples


library(agricolae)
data(pamCIP)
# only code
rownames(pamCIP)<-substr(rownames(pamCIP),1,6)
# groups of clusters
# output<-consensus(pamCIP,nboot=100)
# hcut(output,h=0.4,group=5,main="Group 5")
# 
# hcut(output,h=0.4,group=8,type="t",edgePar=list(lty=1:2,col=2:1),main="group 8"
# ,col.text="blue",cex.text=1)