Calcuates Genotype by Environment Interaction Means along with their Ranks
ge_means(.data, .y, .gen, .env) # S3 method for default ge_means(.data, .y, .gen, .env)
| .data | data.frame |
|---|---|
| .y | Response Variable |
| .gen | Genotypes Factor |
| .env | Environment Factor |
Means and Ranks
Singh, R. K. and Chaudhary, B. D. (2004) Biometrical Methods in Quantitative Genetic Analysis. New Delhi: Kalyani.
data(ge_data) Yield.ge_means <- ge_means( .data = ge_data , .y = Yield , .gen = Gen , .env = Env ) Yield.ge_means$ge_means#> [38;5;246m# A tibble: 60 x 12[39m #> [38;5;246m# Groups: Gen [60][39m #> Gen FSD FSDR Okara Sargodha Gujranwala KotNaina KSK Khanewal Sahiwal #> [3m[38;5;246m<fct>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m #> [38;5;250m 1[39m 013B… [4m4[24m816 [4m4[24m524. [4m4[24m048. [4m4[24m508 [4m3[24m896. [4m3[24m285 [4m3[24m717 [4m5[24m038. [4m4[24m772 #> [38;5;250m 2[39m 1225… [4m4[24m880. [4m4[24m156. [4m2[24m984. [4m4[24m754 [4m4[24m292. [4m4[24m092 [4m3[24m124. [4m4[24m971 [4m4[24m758. #> [38;5;250m 3[39m 1225… [4m4[24m135 [4m4[24m136 [4m4[24m377 [4m4[24m688. [4m4[24m425 [4m3[24m744. [4m3[24m011 [4m5[24m012. [4m5[24m322. #> [38;5;250m 4[39m 12B.… [4m5[24m899 [4m4[24m038. [4m3[24m842. [4m5[24m766 [4m4[24m716. [4m4[24m084. [4m3[24m074 [4m4[24m851 [4m4[24m659 #> [38;5;250m 5[39m 12FJ… [4m4[24m518 [4m4[24m348 [4m3[24m041 [4m4[24m022. [4m3[24m942. [4m4[24m094. [4m4[24m202 [4m4[24m908. [4m4[24m206. #> [38;5;250m 6[39m 14B.… [4m4[24m070. [4m3[24m834. [4m3[24m606. [4m5[24m075 [4m3[24m225 [4m3[24m992 [4m3[24m222. [4m4[24m770 [4m4[24m535 #> [38;5;250m 7[39m 14C0… [4m3[24m660. [4m4[24m018. [4m2[24m951 [4m3[24m980. [4m4[24m693 [4m3[24m508. [4m3[24m566. [4m4[24m918. [4m4[24m165 #> [38;5;250m 8[39m 14C0… [4m5[24m011 [4m4[24m152. [4m3[24m313 [4m3[24m895 [4m3[24m764. [4m2[24m884. [4m3[24m566 [4m4[24m392. [4m3[24m968 #> [38;5;250m 9[39m 9496 [4m4[24m589 [4m3[24m716 [4m3[24m781 [4m4[24m142. [4m4[24m358. [4m3[24m927 [4m2[24m948. [4m4[24m995 [4m4[24m688. #> [38;5;250m10[39m AUR0… [4m4[24m966. [4m3[24m782. [4m3[24m850 [4m4[24m054 [4m3[24m984. [4m3[24m505 [4m2[24m684 [4m4[24m448. [4m4[24m324. #> [38;5;246m# ... with 50 more rows, and 2 more variables: Bhakkar [3m[38;5;246m<dbl>[38;5;246m[23m, #> # Bahawalnagar [3m[38;5;246m<dbl>[38;5;246m[23m[39mYield.ge_means$ge_ranks#> 1 2 3 4 #> FSD "12B.2511" "V14170" "DN126" "PR120" #> FSDR "V14170" "PR119" "PR118" "QS3" #> Okara "NIBGE GANDUM3" "V13348" "PR118" "122559" #> Sargodha "NW181838" "12B.2511" "NRL1123" "NR491" #> Gujranwala "IVII" "FAISALABAD08" "PAKISTAN13" "V14168" #> KotNaina "PR115" "V14170" "WV1038" "UOS1" #> KSK "NR448" "12FJ26" "AZRC11" "BARDC1016" #> Khanewal "LOCAL CHECK" "DN126" "UOS1" "V14170" #> Sahiwal "V14168" "DN126" "122559" "MSH3" #> Bhakkar "V14225" "013BT034" "BARDC1016" "14C036" #> Bahawalnagar "V14154" "KT335" "V14225" "PR115" #> 5 6 7 8 #> FSD "FAISALABAD08" "TWS12245" "PAKISTAN13" "AZRC20" #> FSDR "LOCAL CHECK" "AZRC11" "UOS1" "NRL1123" #> Okara "BARDC1016" "SRN13121" "V14154" "LOCAL CHECK" #> Sargodha "AUR0810" "FAISALABAD08" "PR121" "DN126" #> Gujranwala "PR115" "12B.2511" "14C036" "DN126" #> KotNaina "PR121" "V14168" "CT12176" "NW5201" #> KSK "CT12176" "IVII" "NR443" "SD1013" #> Khanewal "PR115" "NR491" "NW181838" "NRL1123" #> Sahiwal "NR491" "V14170" "V13348" "PR115" #> Bhakkar "DN126" "122559" "FAISALABAD08" "IVII" #> Bahawalnagar "TWS12464" "122559" "SRN13121" "DN111" #> 9 10 11 12 #> FSD "NW181838" "AZRC11" "NIBGE GANDUM3" "PR121" #> FSDR "013BT034" "DN126" "PR120" "AZRC20" #> Okara "MSH3" "DN126" "PR121" "013BT034" #> Sargodha "NIBGE GANDUM3" "CT12176" "PR119" "14B.1030" #> Gujranwala "CT12176" "NRL1206" "DN117" "MSH3" #> KotNaina "V14154" "V13348" "DN126" "NRL1123" #> KSK "PR115" "TWS12464" "PR121" "QS3" #> Khanewal "013BT034" "122559" "WBG14" "9496" #> Sahiwal "UOS1" "NR488" "AZRC11" "DN111" #> Bhakkar "9496" "CT12176" "MSH3" "V14154" #> Bahawalnagar "NR491" "PR121" "AZRC11" "013BT034" #> 13 14 15 16 #> FSD "V14168" "NR488" "LOCAL CHECK" "V14225" #> FSDR "NIBGE GANDUM3" "NR491" "12FJ26" "V14154" #> Okara "PR115" "V12066" "V14227" "NRL1206" #> Sargodha "NR488" "V14154" "NW5201" "PR118" #> Gujranwala "TWS12245" "122559" "NR491" "PR120" #> KotNaina "MSH3" "12FJ26" "122557" "12B.2511" #> KSK "V13348" "NRL1206" "NR491" "PR119" #> Khanewal "122557" "NR443" "IVI" "PAKISTAN13" #> Sahiwal "FAISALABAD08" "TWS12155" "NIBGE GANDUM3" "013BT034" #> Bhakkar "12B.2511" "NR488" "NW181838" "V14170" #> Bahawalnagar "V14170" "14C036" "IVII" "NIBGE GANDUM3" #> 17 18 19 20 21 #> FSD "SRN13121" "PR118" "14C040" "TWS12155" "PR115" #> FSDR "V14225" "FAISALABAD08" "NR488" "IVII" "TWS12155" #> Okara "V14168" "TWS12464" "V14170" "DN117" "AZRC11" #> Sargodha "TWS12464" "KT335" "DN117" "PAKISTAN13" "KT325" #> Gujranwala "NRL1123" "9496" "IVI" "V14154" "122557" #> KotNaina "PR118" "14B.1030" "PAKISTAN13" "AZRC11" "V14227" #> KSK "AZRC20" "013BT034" "V14154" "NIBGE GANDUM3" "V14225" #> Khanewal "DN111" "14C036" "NW5201" "12FJ26" "CT12176" #> Sahiwal "CT12176" "122557" "9496" "NR487" "12B.2511" #> Bhakkar "IVI" "NR487" "14B.1030" "12FJ26" "V14168" #> Bahawalnagar "14B.1030" "14C040" "NR488" "PR118" "12B.2511" #> 22 23 24 25 26 #> FSD "NR491" "AUR0809" "V14154" "TWS12464" "V14227" #> FSDR "122557" "14C040" "122559" "SRN13121" "V14168" #> Okara "AUR0809" "12B.2511" "IVI" "TWS12155" "AUR0810" #> Sargodha "NRL1206" "WV1038" "NR487" "122557" "TWS12245" #> Gujranwala "QS3" "PR121" "UOS1" "LOCAL CHECK" "AUR0810" #> KotNaina "AZRC20" "BARDC1016" "9496" "NW181838" "NR491" #> KSK "PR118" "V14170" "V14227" "SRN13121" "PAKISTAN13" #> Khanewal "DANI16" "V13348" "12B.2511" "FAISALABAD08" "V14225" #> Sahiwal "TWS12464" "PR119" "DN117" "PR120" "IVI" #> Bhakkar "V13348" "KT335" "PR115" "V12066" "NW5201" #> Bahawalnagar "LOCAL CHECK" "NW181838" "TWS12245" "NR487" "NR448" #> 27 28 29 30 31 #> FSD "122557" "NRL1123" "MSH3" "013BT034" "IVII" #> FSDR "MSH3" "PR115" "NW181838" "V14227" "12B.2511" #> Okara "9496" "WV1038" "UOS1" "PAKISTAN13" "14B.1030" #> Sargodha "V13348" "122559" "V14170" "AZRC20" "V14225" #> Gujranwala "V12066" "SRN13121" "TWS12155" "WV1038" "AUR0809" #> KotNaina "NR443" "NR448" "122559" "PR120" "PR119" #> KSK "V12066" "14C036" "14C040" "V14168" "NRL1123" #> Khanewal "AZRC18" "AZRC20" "NIBGE GANDUM3" "TWS12464" "DN117" #> Sahiwal "PR118" "V14225" "14B.1030" "KT325" "V14154" #> Bhakkar "LOCAL CHECK" "PR119" "AZRC11" "NR448" "NR491" #> Bahawalnagar "V14168" "9496" "NW5201" "KT325" "NR443" #> 32 33 34 35 #> FSD "NR448" "PR119" "QS3" "9496" #> FSDR "V13348" "14C036" "CT12176" "TWS12245" #> Okara "TWS12245" "PR119" "NW181838" "V14225" #> Sargodha "SRN13121" "UOS1" "IVII" "TWS12155" #> Gujranwala "12FJ26" "NR448" "PR119" "013BT034" #> KotNaina "NR487" "DN117" "FAISALABAD08" "KT335" #> KSK "TWS12155" "UOS1" "DANI16" "MSH3" #> Khanewal "MSH3" "NR488" "14B.1030" "KT335" #> Sahiwal "LOCAL CHECK" "BARDC1016" "QS3" "NW181838" #> Bhakkar "DN111" "NIBGE GANDUM3" "NRL1123" "TWS12245" #> Bahawalnagar "V12066" "V14227" "AZRC18" "UOS1" #> 36 37 38 39 #> FSD "12FJ26" "DN117" "UOS1" "IVI" #> FSDR "DN117" "IVI" "BARDC1016" "NRL1206" #> Okara "CT12176" "NIBGE GANDUM4" "QS3" "FAISALABAD08" #> Sargodha "V12066" "PR120" "013BT034" "NR448" #> Gujranwala "WBG14" "TWS12464" "14C040" "NW5201" #> KotNaina "LOCAL CHECK" "TWS12245" "WBG14" "V14225" #> KSK "NR488" "PR120" "LOCAL CHECK" "NW181838" #> Khanewal "V14168" "V14227" "AZRC11" "PR120" #> Sahiwal "WV1038" "AZRC20" "NR448" "AUR0809" #> Bhakkar "AZRC20" "QS3" "NR443" "WV1038" #> Bahawalnagar "FAISALABAD08" "NRL1206" "V13348" "DN126" #> 40 41 42 43 44 #> FSD "WBG14" "NRL1206" "122559" "DANI16" "14B.1030" #> FSDR "SD1013" "TWS12464" "PR121" "NR443" "14B.1030" #> Okara "NR488" "NR448" "PR120" "14C040" "AZRC20" #> Sargodha "AZRC18" "PR115" "AZRC11" "LOCAL CHECK" "DN111" #> Gujranwala "PR118" "NW181838" "NIBGE GANDUM4" "V14225" "V14170" #> KotNaina "SRN13121" "TWS12155" "14C036" "AUR0809" "DN111" #> KSK "KT325" "NR487" "DN111" "WBG14" "14B.1030" #> Khanewal "IVII" "PR119" "TWS12245" "WV1038" "V14154" #> Sahiwal "KT335" "PAKISTAN13" "IVII" "TWS12245" "NR443" #> Bhakkar "PR121" "AUR0810" "UOS1" "PAKISTAN13" "V14227" #> Bahawalnagar "12FJ26" "PAKISTAN13" "DN117" "IVI" "WBG14" #> 45 46 47 48 #> FSD "WV1038" "AUR0810" "NR487" "KT325" #> FSDR "AUR0809" "WV1038" "DANI16" "9496" #> Okara "DANI16" "NR443" "NR487" "WBG14" #> Sargodha "V14168" "MSH3" "NIBGE GANDUM4" "9496" #> Gujranwala "DN111" "NIBGE GANDUM3" "NR488" "NR443" #> KotNaina "SD1013" "NIBGE GANDUM4" "TWS12464" "IVII" #> KSK "FAISALABAD08" "122557" "IVI" "AZRC18" #> Khanewal "PR118" "NIBGE GANDUM4" "NR487" "AUR0809" #> Sahiwal "NW5201" "AUR0810" "WBG14" "V12066" #> Bhakkar "DN117" "AZRC18" "PR118" "DANI16" #> Bahawalnagar "TWS12155" "AZRC20" "MSH3" "NRL1123" #> 49 50 51 52 53 #> FSD "V12066" "V13348" "DN111" "SD1013" "NR443" #> FSDR "NW5201" "KT325" "V12066" "NR487" "PAKISTAN13" #> Okara "NW5201" "NRL1123" "KT335" "SD1013" "AZRC18" #> Sargodha "BARDC1016" "AUR0809" "12FJ26" "NR443" "14C036" #> Gujranwala "V14227" "KT335" "BARDC1016" "DANI16" "SD1013" #> KotNaina "013BT034" "AUR0810" "DANI16" "NR488" "NIBGE GANDUM3" #> KSK "AUR0810" "12B.2511" "KT335" "122559" "TWS12245" #> Khanewal "14C040" "KT325" "AUR0810" "TWS12155" "PR121" #> Sahiwal "12FJ26" "NRL1123" "14C036" "NRL1206" "14C040" #> Bhakkar "122557" "NRL1206" "14C040" "WBG14" "TWS12464" #> Bahawalnagar "PR119" "CT12176" "BARDC1016" "PR120" "AUR0810" #> 54 55 56 57 #> FSD "NIBGE GANDUM4" "NW5201" "AZRC18" "BARDC1016" #> FSDR "WBG14" "NR448" "NIBGE GANDUM4" "AUR0810" #> Okara "12FJ26" "122557" "14C036" "KT325" #> Sargodha "14C040" "QS3" "V14227" "WBG14" #> Gujranwala "NR487" "AZRC11" "AZRC18" "14B.1030" #> KotNaina "NRL1206" "AZRC18" "V12066" "KT325" #> KSK "9496" "NW5201" "NIBGE GANDUM4" "WV1038" #> Khanewal "NR448" "NRL1206" "QS3" "V12066" #> Sahiwal "PR121" "DANI16" "V14227" "NIBGE GANDUM4" #> Bhakkar "PR120" "KT325" "TWS12155" "SRN13121" #> Bahawalnagar "122557" "WV1038" "AUR0809" "NIBGE GANDUM4" #> 58 59 60 #> FSD "14C036" "KT335" "CT12176" #> FSDR "KT335" "AZRC18" "DN111" #> Okara "DN111" "NR491" "IVII" #> Sargodha "IVI" "DANI16" "SD1013" #> Gujranwala "V13348" "AZRC20" "KT325" #> KotNaina "QS3" "14C040" "IVI" #> KSK "DN126" "DN117" "AUR0809" #> Khanewal "BARDC1016" "SD1013" "SRN13121" #> Sahiwal "AZRC18" "SRN13121" "SD1013" #> Bhakkar "NIBGE GANDUM4" "AUR0809" "SD1013" #> Bahawalnagar "DANI16" "SD1013" "QS3"Yield.ge_means$g_means#> [38;5;246m# A tibble: 60 x 2[39m #> Gen Mean #> [3m[38;5;246m<fct>[39m[23m [3m[38;5;246m<dbl>[39m[23m #> [38;5;250m 1[39m 013BT034 [4m4[24m248. #> [38;5;250m 2[39m 122557 [4m4[24m062. #> [38;5;250m 3[39m 122559 [4m4[24m259. #> [38;5;250m 4[39m 12B.2511 [4m4[24m414. #> [38;5;250m 5[39m 12FJ26 [4m4[24m057. #> [38;5;250m 6[39m 14B.1030 [4m3[24m995. #> [38;5;250m 7[39m 14C036 [4m3[24m943. #> [38;5;250m 8[39m 14C040 [4m3[24m825. #> [38;5;250m 9[39m 9496 [4m4[24m072. #> [38;5;250m10[39m AUR0809 [4m3[24m792. #> [38;5;246m# ... with 50 more rows[39mYield.ge_means$e_means#> [38;5;246m# A tibble: 11 x 2[39m #> Env Mean #> [3m[38;5;246m<fct>[39m[23m [3m[38;5;246m<dbl>[39m[23m #> [38;5;250m 1[39m FSD [4m4[24m629. #> [38;5;250m 2[39m FSDR [4m4[24m063. #> [38;5;250m 3[39m Okara [4m3[24m634. #> [38;5;250m 4[39m Sargodha [4m4[24m605. #> [38;5;250m 5[39m Gujranwala [4m4[24m014. #> [38;5;250m 6[39m KotNaina [4m3[24m760. #> [38;5;250m 7[39m KSK [4m3[24m470. #> [38;5;250m 8[39m Khanewal [4m4[24m719. #> [38;5;250m 9[39m Sahiwal [4m4[24m478. #> [38;5;250m10[39m Bhakkar [4m3[24m715. #> [38;5;250m11[39m Bahawalnagar [4m3[24m581.