R/stab_par.R
stab_par.Rd
Stability Parameters for Genotypes by Environment Interaction (GEI)
stab_par(.data, .y, .rep, .gen, .env, alpha = 0.1, .envCov = NULL) # S3 method for default stab_par(.data, .y, .rep, .gen, .env, alpha = 0.1, .envCov = NULL)
.data | data.frame |
---|---|
.y | Response Variable |
.rep | Replication Factor |
.gen | Genotypes Factor |
.env | Environment Factor |
alpha | Level of Significance, default is 0.1 |
.envCov | Environmental Covariate, default is NULL |
Stability Parameters
Singh, R. K. and Chaudhary, B. D. (2004) Biometrical Methods in Quantitative Genetic Analysis. New Delhi: Kalyani.
data(ge_data) Yield.StabPar <- stab_par( .data = ge_data , .y = Yield , .rep = Rep , .gen = Gen , .env = Env , alpha = 0.1 , .envCov = NULL )#> Warning: ANOVA F-tests on an essentially perfect fit are unreliableYield.StabPar#> $ANOVA #> Df Sum Sq Mean Sq F value Pr(>F) #> Total 659 536939402 #> Gen 59 71662431 1214617 3.7143 4.441e-16 *** #> Env 10 263940496 26394050 266.1568 < 2.2e-16 *** #> Gen x Env 590 201336476 341248 3.4411 < 2.2e-16 *** #> Heterogeneity 59 27695329 469412 1.4355 0.02256 * #> Residual 531 173641147 327008 3.2975 < 2.2e-16 *** #> Pooled error 38291 99167 #> --- #> Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 #> #> $StabPar #> [38;5;246m# A tibble: 60 x 12[39m #> Gen Mean GenSS Var CV Ecov GE.SS GE.MSE Sigma . SP #> [38;5;250m*[39m [3m[38;5;246m<fct>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<fct>[39m[23m [3m[38;5;246m<dbl>[39m[23m #> [38;5;250m 1[39m 013B… [4m4[24m248. 1.47[38;5;246me[39m6 1.47[38;5;246me[39m5 6.39 4.73[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 4.75[38;5;246me[39m4 * 5.27[38;5;246me[39m4 #> [38;5;250m 2[39m 1225… [4m4[24m062. 2.81[38;5;246me[39m6 2.81[38;5;246me[39m5 9.23 5.80[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 5.85[38;5;246me[39m4 ** 3.16[38;5;246me[39m4 #> [38;5;250m 3[39m 1225… [4m4[24m259. 1.96[38;5;246me[39m6 1.96[38;5;246me[39m5 7.36 9.00[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 9.16[38;5;246me[39m4 ** 1.02[38;5;246me[39m5 #> [38;5;250m 4[39m 12B.… [4m4[24m414. 3.75[38;5;246me[39m6 3.75[38;5;246me[39m5 9.81 1.25[38;5;246me[39m6 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 1.28[38;5;246me[39m5 ** 9.06[38;5;246me[39m4 #> [38;5;250m 5[39m 12FJ… [4m4[24m057. 1.23[38;5;246me[39m6 1.23[38;5;246me[39m5 6.11 7.84[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 7.96[38;5;246me[39m4 ** 7.75[38;5;246me[39m4 #> [38;5;250m 6[39m 14B.… [4m3[24m995. 1.76[38;5;246me[39m6 1.76[38;5;246me[39m5 7.42 6.68[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 6.77[38;5;246me[39m4 ** 7.54[38;5;246me[39m4 #> [38;5;250m 7[39m 14C0… [4m3[24m943. 1.53[38;5;246me[39m6 1.53[38;5;246me[39m5 7.00 1.27[38;5;246me[39m6 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 1.30[38;5;246me[39m5 ** 1.26[38;5;246me[39m5 #> [38;5;250m 8[39m 14C0… [4m3[24m825. 1.63[38;5;246me[39m6 1.63[38;5;246me[39m5 7.46 7.32[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 7.42[38;5;246me[39m4 ** 8.16[38;5;246me[39m4 #> [38;5;250m 9[39m 9496 [4m4[24m072. 1.64[38;5;246me[39m6 1.64[38;5;246me[39m5 7.03 4.96[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 4.98[38;5;246me[39m4 * 5.55[38;5;246me[39m4 #> [38;5;250m10[39m AUR0… [4m3[24m792. 2.29[38;5;246me[39m6 2.29[38;5;246me[39m5 8.93 6.17[38;5;246me[39m5 5.03[38;5;246me[39m7 [4m8[24m[4m5[24m312. 6.24[38;5;246me[39m4 ** 6.09[38;5;246me[39m4 #> [38;5;246m# ... with 50 more rows, and 1 more variable: .. [3m[38;5;246m<fct>[38;5;246m[23m[39m #> #> $SimultSel #> [38;5;246m# A tibble: 60 x 9[39m #> Gen Mean Rank Adjustment Adj.Rank Sigma Stab.Rating YSi Select #> [38;5;250m*[39m [3m[38;5;246m<fct>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<int>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<dbl>[39m[23m [3m[38;5;246m<fct>[39m[23m #> [38;5;250m 1[39m 013BT034 [4m4[24m248. 50 2 52 [4m4[24m[4m7[24m497. -[31m4[39m 48 + #> [38;5;250m 2[39m 122557 [4m4[24m062. 30 1 31 [4m5[24m[4m8[24m507. -[31m8[39m 23 - #> [38;5;250m 3[39m 122559 [4m4[24m259. 51 2 53 [4m9[24m[4m1[24m647. -[31m8[39m 45 + #> [38;5;250m 4[39m 12B.2511 [4m4[24m414. 57 3 60 [4m1[24m[4m2[24m[4m7[24m575. -[31m8[39m 52 + #> [38;5;250m 5[39m 12FJ26 [4m4[24m057. 29 -[31m1[39m 28 [4m7[24m[4m9[24m595. -[31m8[39m 20 - #> [38;5;250m 6[39m 14B.1030 [4m3[24m995. 24 -[31m1[39m 23 [4m6[24m[4m7[24m684. -[31m8[39m 15 - #> [38;5;250m 7[39m 14C036 [4m3[24m943. 20 -[31m1[39m 19 [4m1[24m[4m3[24m[4m0[24m283. -[31m8[39m 11 - #> [38;5;250m 8[39m 14C040 [4m3[24m825. 8 -[31m2[39m 6 [4m7[24m[4m4[24m224. -[31m8[39m -[31m2[39m - #> [38;5;250m 9[39m 9496 [4m4[24m072. 31 1 32 [4m4[24m[4m9[24m799. -[31m4[39m 28 + #> [38;5;250m10[39m AUR0809 [4m3[24m792. 7 -[31m2[39m 5 [4m6[24m[4m2[24m391. -[31m8[39m -[31m3[39m - #> [38;5;246m# ... with 50 more rows[39m #>