Skip to contents

Authors and Citation

Authors

  • Muhammad Yaseen. Author, maintainer.

  • Jose Crossa. Author, contributor.

  • Sergio Perez-Elizalde. Author, contributor.

  • Diego Jarquin. Author, contributor.

  • Jose Miguel Cotes. Author, contributor.

  • Kert Viele. Author, contributor.

  • Genzhou Liu. Author, contributor.

  • Paul L. Cornelius. Author, contributor.

  • Julian Garcia Abadillo Velasco. Author, contributor.

Citation

Source: inst/CITATION

Yaseen, M., Crossa, J., Perez-Elizalde, S., Jarquin, D., Cotes, J. M., Viele, K., Liu, G., Cornelius, P. L. and Garcia Abadillo Velasco, J. (2026). bayesammi: Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model. R package version 1.0.0 (first released 2018). https://CRAN.R-project.org/package=bayesammi

@Manual{bayesammi,
  title = {{bayesammi}: Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model},
  author = {Muhammad Yaseen and Jose Crossa and Sergio Perez-Elizalde and Diego Jarquin and Jose Miguel Cotes and Kert Viele and Genzhou Liu and Paul L. Cornelius and Julian Garcia {Abadillo Velasco}},
  year = {2026},
  note = {R package version 1.0.0 (first released 2018)},
  url = {https://CRAN.R-project.org/package=bayesammi},
}

Crossa, J., Perez-Elizalde, S., Jarquin, D., Cotes, J. M., Viele, K., Liu, G. and Cornelius, P. L. (2011). Bayesian estimation of the additive main effects and multiplicative interaction model. Crop Science, 51(4), 1458-1469. doi:10.2135/cropsci2010.06.0343

@Article{Crossa2011,
  title = {Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model},
  author = {Jose Crossa and Sergio Perez-Elizalde and Diego Jarquin and Jose Miguel Cotes and Kert Viele and Genzhou Liu and Paul L. Cornelius},
  journal = {Crop Science},
  year = {2011},
  volume = {51},
  number = {4},
  pages = {1458--1469},
  doi = {10.2135/cropsci2010.06.0343},
}

Perez-Elizalde, S., Jarquin, D. and Crossa, J. (2012). A general Bayesian estimation method of linear-bilinear models applied to plant breeding trials with genotype x environment interaction. Journal of Agricultural, Biological, and Environmental Statistics, 17(1), 15-37. doi:10.1007/s13253-011-0063-9

@Article{PerezElizalde2012,
  title = {A General {Bayesian} Estimation Method of Linear-Bilinear Models Applied to Plant Breeding Trials with Genotype x Environment Interaction},
  author = {Sergio Perez-Elizalde and Diego Jarquin and Jose Crossa},
  journal = {Journal of Agricultural, Biological, and Environmental Statistics},
  year = {2012},
  volume = {17},
  number = {1},
  pages = {15--37},
  doi = {10.1007/s13253-011-0063-9},
}

Dias, K. O. G., dos Santos, J. P. R., Krause, M. D., Piepho, H.-P., Guimaraes, L. J. M., Pastina, M. M. and Garcia, A. A. F. (2022). Leveraging probability concepts for cultivar recommendation in multi-environment trials. Theoretical and Applied Genetics. doi:10.1007/s00122-022-04041-y

@Article{Dias2022,
  title = {Leveraging Probability Concepts for Cultivar Recommendation in Multi-Environment Trials},
  author = {K. O. G. Dias and J. P. R. {dos Santos} and M. D. Krause and H.-P. Piepho and L. J. M. Guimaraes and M. M. Pastina and A. A. F. Garcia},
  journal = {Theoretical and Applied Genetics},
  year = {2022},
  doi = {10.1007/s00122-022-04041-y},
}

Finlay, K. W. and Wilkinson, G. N. (1963). The analysis of adaptation in a plant-breeding programme. Australian Journal of Agricultural Research, 14(6), 742-754. doi:10.1071/AR9630742

@Article{FinlayWilkinson1963,
  title = {The Analysis of Adaptation in a Plant-Breeding Programme},
  author = {K. W. Finlay and G. N. Wilkinson},
  journal = {Australian Journal of Agricultural Research},
  year = {1963},
  volume = {14},
  number = {6},
  pages = {742--754},
  doi = {10.1071/AR9630742},
}

Eberhart, S. A. and Russell, W. A. (1966). Stability parameters for comparing varieties. Crop Science, 6(1), 36-40. doi:10.2135/cropsci1966.0011183X000600010011x

@Article{EberhartRussell1966,
  title = {Stability Parameters for Comparing Varieties},
  author = {S. A. Eberhart and W. A. Russell},
  journal = {Crop Science},
  year = {1966},
  volume = {6},
  number = {1},
  pages = {36--40},
  doi = {10.2135/cropsci1966.0011183X000600010011x},
}

Shukla, G. K. (1972). Some statistical aspects of partitioning genotype-environmental components of variability. Heredity, 29(2), 237-245. doi:10.1038/hdy.1972.87

@Article{Shukla1972,
  title = {Some Statistical Aspects of Partitioning Genotype-Environmental Components of Variability},
  author = {G. K. Shukla},
  journal = {Heredity},
  year = {1972},
  volume = {29},
  number = {2},
  pages = {237--245},
  doi = {10.1038/hdy.1972.87},
}

Lian, L. and de los Campos, G. (2016). FW: an R package for Finlay-Wilkinson regression that incorporates genomic/pedigree information and covariance structures between environments. G3: Genes, Genomes, Genetics, 6(3), 589-597. doi:10.1534/g3.115.026328

@Article{LianCampos2016,
  title = {{FW}: An {R} Package for {Finlay-Wilkinson} Regression that Incorporates Genomic/Pedigree Information and Covariance Structures Between Environments},
  author = {L. Lian and G. {de los Campos}},
  journal = {G3: Genes, Genomes, Genetics},
  year = {2016},
  volume = {6},
  number = {3},
  pages = {589--597},
  doi = {10.1534/g3.115.026328},
}

Oliveira, T. R. A., Carvalho, H. W. L., Nascimento, M., Costa, E. F. N., Amaral Junior, A. T., Gravina, G. A. and Carvalho Filho, J. L. S. (2018). The Eberhart and Russell's Bayesian method used as an instrument to select maize hybrids. Euphytica, 214, 64. doi:10.1007/s10681-018-2146-y

@Article{Oliveira2018,
  title = {The {Eberhart} and {Russell}'s {Bayesian} Method Used as an Instrument to Select Maize Hybrids},
  author = {T. R. A. {de Oliveira} and H. W. L. {de Carvalho} and M. Nascimento and E. F. N. Costa and A. T. {do Amaral Junior} and G. A. Gravina and J. L. S. {de Carvalho Filho}},
  journal = {Euphytica},
  year = {2018},
  volume = {214},
  pages = {64},
  doi = {10.1007/s10681-018-2146-y},
}

Edwards, J. W. and Jannink, J.-L. (2006). Bayesian modeling of heterogeneous error and genotype x environment interaction variances. Crop Science, 46(2), 820. doi:10.2135/cropsci2005.0164

@Article{EdwardsJannink2006,
  title = {{Bayesian} Modeling of Heterogeneous Error and Genotype x Environment Interaction Variances},
  author = {J. W. Edwards and J.-L. Jannink},
  journal = {Crop Science},
  year = {2006},
  volume = {46},
  number = {2},
  pages = {820},
  doi = {10.2135/cropsci2005.0164},
}

Eskridge, K. M. (1990). Selection of stable cultivars using a safety-first rule. Crop Science, 30, 369-374.

@Article{Eskridge1990,
  title = {Selection of Stable Cultivars Using a Safety-First Rule},
  author = {K. M. Eskridge},
  journal = {Crop Science},
  year = {1990},
  volume = {30},
  pages = {369--374},
}

Wricke, G. (1962). Uber eine Methode zur Erfassung der okologischen Streubreite in Feldversuchen. Zeitschrift fur Pflanzenzuchtung, 47, 92-96.

@Article{Wricke1962,
  title = {{\"U}ber eine Methode zur Erfassung der {\"o}kologischen Streubreite in Feldversuchen},
  author = {G. Wricke},
  journal = {Zeitschrift f{\"u}r Pflanzenz{\"u}chtung},
  year = {1962},
  volume = {47},
  pages = {92--96},
}

Lin, C. S. and Binns, M. R. (1988). A superiority measure of cultivar performance for cultivar x location data. Canadian Journal of Plant Science, 68(1), 193-198. doi:10.4141/cjps88-018

@Article{LinBinns1988,
  title = {A Superiority Measure of Cultivar Performance for Cultivar x Location Data},
  author = {C. S. Lin and M. R. Binns},
  journal = {Canadian Journal of Plant Science},
  year = {1988},
  volume = {68},
  number = {1},
  pages = {193--198},
  doi = {10.4141/cjps88-018},
}

Annicchiarico, P. (1992). Cultivar adaptation and recommendation from alfalfa trials in Northern Italy. Journal of Genetics and Breeding, 46, 269-278.

@Article{Annicchiarico1992,
  title = {Cultivar Adaptation and Recommendation from Alfalfa Trials in {Northern Italy}},
  author = {P. Annicchiarico},
  journal = {Journal of Genetics and Breeding},
  year = {1992},
  volume = {46},
  pages = {269--278},
}

Purchase, J. L., Hatting, H. and van Deventer, C. S. (2000). Genotype x environment interaction of winter wheat (Triticum aestivum L.) in South Africa: II. Stability analysis of yield performance. South African Journal of Plant and Soil, 17(3), 101-107.

@Article{Purchase2000,
  title = {Genotype x Environment Interaction of Winter Wheat ({Triticum aestivum} {L}.) in South Africa: {II}. Stability Analysis of Yield Performance},
  author = {J. L. Purchase and H. Hatting and C. S. {van Deventer}},
  journal = {South African Journal of Plant and Soil},
  year = {2000},
  volume = {17},
  number = {3},
  pages = {101--107},
}

Sneller, C. H., Kilgore-Norquest, L. and Dombek, D. (1997). Repeatability of yield stability statistics in soybean. Crop Science, 37(2), 383-390.

@Article{Sneller1997,
  title = {Repeatability of Yield Stability Statistics in Soybean},
  author = {C. H. Sneller and L. Kilgore-Norquest and D. Dombek},
  journal = {Crop Science},
  year = {1997},
  volume = {37},
  number = {2},
  pages = {383--390},
}

Zobel, R. W. (1994). Stress resistance and root systems. In Proceedings of the Workshop on Adaptation of Plants to Soil Stress, INTSORMIL Publication 94-2, 80-99. Institute of Agriculture and Natural Resources, University of Nebraska-Lincoln.

@InProceedings{Zobel1994,
  title = {Stress Resistance and Root Systems},
  author = {R. W. Zobel},
  booktitle = {Proceedings of the Workshop on Adaptation of Plants to Soil Stress},
  series = {INTSORMIL Publication 94-2},
  year = {1994},
  pages = {80--99},
  publisher = {Institute of Agriculture and Natural Resources, University of Nebraska-Lincoln},
}

Zali, H., Farshadfar, E., Sabaghpour, S. H. and Karimizadeh, R. (2012). Evaluation of genotype x environment interaction in chickpea using measures of stability from AMMI model. Annals of Biological Research, 3(7), 3126-3136.

@Article{Zali2012,
  title = {Evaluation of Genotype x Environment Interaction in Chickpea Using Measures of Stability from {AMMI} Model},
  author = {H. Zali and E. Farshadfar and S. H. Sabaghpour and R. Karimizadeh},
  journal = {Annals of Biological Research},
  year = {2012},
  volume = {3},
  number = {7},
  pages = {3126--3136},
}

Olivoto, T., Lucio, A. D. C., da Silva, J. A. G., Marchioro, V. S., de Souza, V. Q. and Jost, E. (2019). Mean performance and stability in multi-environment trials I: combining features of AMMI and BLUP techniques. Agronomy Journal, 111(6), 2949-2960. doi:10.2134/agronj2019.03.0220

@Article{Olivoto2019,
  title = {Mean Performance and Stability in Multi-Environment Trials {I}: Combining Features of {AMMI} and {BLUP} Techniques},
  author = {T. Olivoto and A. D. C. Lucio and J. A. G. {da Silva} and V. S. Marchioro and V. Q. {de Souza} and E. Jost},
  journal = {Agronomy Journal},
  year = {2019},
  volume = {111},
  number = {6},
  pages = {2949--2960},
  doi = {10.2134/agronj2019.03.0220},
}